Welcome to AnVIL

User-centered solution for genomic data access, analysis, and visualization.
Based on familiar software platforms.
Engineered for cloud infrastructure.

About the project

Invert the model of genomic data access and sharing. The AnVIL is a 5-year project funded by the NIH to create a managed platform for genomics reserchers. Led by the Broad Institue and Johns Hopkins University, the project is a large consortium bringing together some of the most popular data analysis and management tools to form a virtual laboratory that allows researcher to readily access, use, and collaborate using most popular tools, data, and technologies.

Project aims

Create world-class open source software

Storage, scalable analytics, data visualization

Organize and host key NHGRI datasets

CCDG, CMG, eMERGE, and more coming

Operate services for the world

Security, training & outreach, new models of data access

The team

The AnVIL is a large consortium project to which many groups and individuals are contributing. The following is a list of organizations and groups that make up the team.

Johns Hopkins University

Taylor, Leek, Schatz, Hansen

Penn State University

Nekrutenko

Oregon Health & Sciences University

Goecks and Ellrott

Roswell Park Cancer Institute

Morgan

Harvard University

Carey

City University of New York

Waldron

Broad Institute

Philippakis, MacArthur

University of Chicago

Grossman

University of California, Santa Cruz

Paten

Vanderbilt University

Denny

Washington University

Hall

AHA

Hall

Project implementation

The AnVIL team brings together groups that have extensive experience building open-source platforms, tools, and workflows that are widely used in the genomics community. These include Bioconductor, Galaxy, and Firecloud, among others. The AnVIL project will leverage those tools to build a more accessible and integrated platform for the genomics researchers.

In broad strokes, the AnVIL project is composed from the following layers:

Compute and storage infrastructure

AnVIL will create a suite of modular cloud services that support storing and analyzing genomic data at scale. Initially based on the Google Compute Cloud, the AnVIL infrastructure layer will manage resource provisioning, scaling, authentication and authorization, and data access. All the services will be developed under permissive open source license and the available APIs will be built in concert with GA4GH and other standards, making the AnVIL platform an extensible resource for the genomics community.

Data analysis platforms

Layered on top of the infrastructure, the data analysis platforms layer will be seeded with of some of the most popular data analysis environments available today. This expandable set of environments will allow you to browse, analyze, and visualize data through a web browser as well as the API and command line interface. The environments will also be linked to allow data to be seamlessly accessed across them.

Training

The AnVIL team will create a scalable training program with a focus on researchers and use cases. Through a combination of online courses, in-person workshops, and course materials, content will be created using FAIR methodologies and tailored to a variety of scenarios. Specific modules will be created for data consumers, data analysts, methods developers, and principal investigators.

Hands-on

Get your hands wet using AnVIL in one of these interactive workshops.

Talks & Lectures

Learn more about the current and future features of the AnVIL platform from its creators.

Learn on your own

Learn from the comfort of your office, lab, or home via one of many online tutorials.

Community

Check out analyses, data, videos from other researchers on how they have used AnVIL.

Get in touch

Extensive documentation will be available at docs.useanvil.org as the project starts to deliver on its milestones. In the meantime, feel free to reach out on the AnVIL Slack channel. You can also just send us a message below.